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StrepLeeu1.0

Description:
Streptomyces leeuwenhoekii C34 1.0
Organism name:
Streptomyces leeuwenhoekii (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: C34
BioSample:
SAMN02808814
BioProject:
PRJNA231986
Submitter:
Institute of Biology, Leiden University
Date:
2014/05/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000696595.1 (latest)
RefSeq assembly accession:
GCF_000696595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZSD01
Assembly method:
Velvet v. 1.2.06
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
Illumina HiSeq

IDs: 181311 [UID] 1086928 [GenBank] 1139918 [RefSeq]

See Genome Information for Streptomyces leeuwenhoekii

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from School of Biology, University of Newcastle, Newcastle upon Tyne, NE1 7RU, UK. Source DNA available from Molecular Biotechnology, Institute of Biology, Leiden University Aeo P.O. Box 9505, 2300RA, Leiden, The Netherlands.
The strain was corrected to agree ... with the publication (PubMed ID 24604690) in August 2020  more

Global statistics

Total sequence length7,854,862
Total ungapped length7,838,420
Gaps between scaffolds0
Number of scaffolds602
Scaffold N5027,217
Scaffold L5085
Number of contigs742
Contig N5021,028
Contig L50112
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)602

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,854,8626027,838,42027,2171400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces leeuwenhoekiiStreptomyces leeuwenhoekii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001013905.1Streptomyces leeuwenhoekiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001013905.1Streptomyces leeuwenhoekiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.7096.21
Best-match type99.9999.7096.21

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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