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Bra_napus_v2.0

Organism name:
Brassica napus (rape)
Infraspecific name:
Cultivar: ZS11
BioSample:
SAMN02742820
BioProject:
PRJNA237736
Submitter:
BGI-Shenzhen
Date:
2017/09/15
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000686985.2 (latest)
RefSeq assembly accession:
GCF_000686985.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosomes MT, Pltd, linear plasmid (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
JMKK02
Assembly method:
SOAPdenovo v. 2; Celera v. 8.3rc2
Expected final version:
yes
Genome coverage:
200x
Sequencing technology:
Illumina HiSeq 2000

IDs: 1200221 [UID] 5018708 [GenBank] 5035128 [RefSeq]

See Genome Information for Brassica napus

There are 2 assemblies for this organism

See more

History (Show revision history)

Global statistics

Total sequence length976,190,593
Total ungapped length907,348,287
Gaps between scaffolds0
Number of scaffolds1,471
Scaffold N5045,943,547
Scaffold L509
Number of contigs34,110
Contig N5055,443
Contig L504,850
Total number of chromosomes and plasmids22
Number of component sequences (WGS or clone)34,110

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000686995.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome A1CM002759.2=NC_027757.20
Chromosome A2CM002760.2=NC_027758.20
Chromosome A3CM002761.2=NC_027759.20
Chromosome A4CM002762.2=NC_027760.20
Chromosome A5CM002763.2=NC_027761.20
Chromosome A6CM002764.2=NC_027762.20
Chromosome A7CM002765.2=NC_027763.20
Chromosome A8CM002766.2=NC_027764.20
Chromosome A9CM002767.2=NC_027765.20
Chromosome A10CM002768.2=NC_027766.20
Chromosome C1CM002769.2=NC_027767.20
Chromosome C2CM002770.2=NC_027768.20
Chromosome C3CM002771.2=NC_027769.20
Chromosome C4CM002772.2=NC_027770.20
Chromosome C5CM002773.2=NC_027771.20
Chromosome C6CM002774.2=NC_027772.20
Chromosome C7CM002775.2=NC_027773.20
Chromosome C8CM002776.2=NC_027774.20
Chromosome C9CM002777.2=NC_027775.20
unplacedn/an/an/a1,449

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All975,804,2401,468906,961,93445,943,54732,6390
Chromosome A135,822,559133,633,40835,822,5591,0690
Chromosome A235,332,830133,382,61935,332,8309520
Chromosome A349,139,117146,154,41649,139,1171,3520
Chromosome A423,556,786121,690,50623,556,7866520
Chromosome A531,473,442129,619,41231,473,4429710
Chromosome A636,080,978133,947,40936,080,9789600
Chromosome A727,426,920125,916,61327,426,9207220
Chromosome A827,741,901125,878,07027,741,9017320
Chromosome A945,943,547142,891,77445,943,5471,2490
Chromosome A1022,217,278120,948,56822,217,2786120
Chromosome C150,776,417146,586,70650,776,4172,0120
Chromosome C268,396,429162,985,20568,396,4292,5160
Chromosome C380,379,029174,940,11580,379,0292,7550
Chromosome C470,552,672165,051,74470,552,6722,5790
Chromosome C544,144,641140,955,09844,144,6411,4910
Chromosome C645,505,715141,852,56845,505,7151,6890
Chromosome C762,442,587157,739,60762,442,5872,2160
Chromosome C846,347,054143,204,69846,347,0541,6140
Chromosome C951,699,379147,111,05351,699,3791,8970
unplaced120,824,9591,449112,472,345207,7984,5990
MoleculeTotal
Length
All386,353
Mitochondrion MT221,853
Chloroplast Pltd152,860
Mitochondrial Plasmid linear plasmid11,640
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