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Source database (GenBank or RefSeq) File type

Bra_napus_v2.0

Organism name:

Brassica napus (rape)

Infraspecific name:

Cultivar: ZS11

BioSample:

SAMN02742820

BioProject:

PRJNA237736

Submitter:

BGI-Shenzhen

Date:

2017/09/15

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_000686985.2 (latest)

RefSeq assembly accession:

GCF_000686985.2 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT, Pltd, linear plasmid

Data displayed for GenBank version

WGS Project:

JMKK02

Assembly method:

SOAPdenovo v. 2; Celera v. 8.3rc2

Expected final version:

yes

Genome coverage:

200x

Sequencing technology:

Illumina HiSeq 2000

IDs: 1200221 [UID] 5018708 [GenBank] 5035128 [RefSeq]

See Genome Information for Brassica napus

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000686985.2	≠	GCF_000686985.2	Bra_napus_v2.0	Chromosome	Latest GenBank, RefSeq suppressed
GCA_000686985.1	≠	GCF_000686985.1	Brassica_napus_assembly_v1.0	Chromosome	Replaced GenBank, RefSeq suppressed

Comment

Global statistics

Total sequence length	975,804,240
Total ungapped length	906,961,934
Gaps between scaffolds	0
Number of scaffolds	1,468
Scaffold N50	45,943,547
Scaffold L50	9
Number of contigs	34,107
Contig N50	55,410
Contig L50	4,852
Total number of chromosomes and plasmids	19
Number of component sequences (WGS or clone)	34,107

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome A1	CM002759.2	=	NC_027757.2	0
Chromosome A2	CM002760.2	=	NC_027758.2	0
Chromosome A3	CM002761.2	=	NC_027759.2	0
Chromosome A4	CM002762.2	=	NC_027760.2	0
Chromosome A5	CM002763.2	=	NC_027761.2	0
Chromosome A6	CM002764.2	=	NC_027762.2	0
Chromosome A7	CM002765.2	=	NC_027763.2	0
Chromosome A8	CM002766.2	=	NC_027764.2	0
Chromosome A9	CM002767.2	=	NC_027765.2	0
Chromosome A10	CM002768.2	=	NC_027766.2	0
Chromosome C1	CM002769.2	=	NC_027767.2	0
Chromosome C2	CM002770.2	=	NC_027768.2	0
Chromosome C3	CM002771.2	=	NC_027769.2	0
Chromosome C4	CM002772.2	=	NC_027770.2	0
Chromosome C5	CM002773.2	=	NC_027771.2	0
Chromosome C6	CM002774.2	=	NC_027772.2	0
Chromosome C7	CM002775.2	=	NC_027773.2	0
Chromosome C8	CM002776.2	=	NC_027774.2	0
Chromosome C9	CM002777.2	=	NC_027775.2	0
unplaced	n/a	n/a	n/a	1,449

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	975,804,240	1,468	906,961,934	45,943,547	32,639
Chromosome A1	35,822,559	1	33,633,408	35,822,559	1,069
Chromosome A2	35,332,830	1	33,382,619	35,332,830	952
Chromosome A3	49,139,117	1	46,154,416	49,139,117	1,352
Chromosome A4	23,556,786	1	21,690,506	23,556,786	652
Chromosome A5	31,473,442	1	29,619,412	31,473,442	971
Chromosome A6	36,080,978	1	33,947,409	36,080,978	960
Chromosome A7	27,426,920	1	25,916,613	27,426,920	722
Chromosome A8	27,741,901	1	25,878,070	27,741,901	732
Chromosome A9	45,943,547	1	42,891,774	45,943,547	1,249
Chromosome A10	22,217,278	1	20,948,568	22,217,278	612
Chromosome C1	50,776,417	1	46,586,706	50,776,417	2,012
Chromosome C2	68,396,429	1	62,985,205	68,396,429	2,516
Chromosome C3	80,379,029	1	74,940,115	80,379,029	2,755
Chromosome C4	70,552,672	1	65,051,744	70,552,672	2,579
Chromosome C5	44,144,641	1	40,955,098	44,144,641	1,491
Chromosome C6	45,505,715	1	41,852,568	45,505,715	1,689
Chromosome C7	62,442,587	1	57,739,607	62,442,587	2,216
Chromosome C8	46,347,054	1	43,204,698	46,347,054	1,614
Chromosome C9	51,699,379	1	47,111,053	51,699,379	1,897
unplaced	120,824,959	1,449	112,472,345	207,798	4,599

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Bra_napus_v2.0

See Genome Information for Brassica napus

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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