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ASM64787v1

Organism name:
Streptomyces sp. SolWspMP-sol2th (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SolWspMP-sol2th
BioSample:
SAMN02951871
BioProject:
PRJNA169755
Submitter:
DOE Joint Genome Institute
Date:
2014/04/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000647875.1 (latest)
RefSeq assembly accession:
GCF_000647875.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ARPF01
Assembly method:
Velvet v. 1.1.04; ALLPATHS v. r41043
Genome coverage:
Unknown
Sequencing technology:
Unknown

IDs: 156421 [UID] 1023878 [GenBank] 1125358 [RefSeq]

See Genome Information for Streptomyces sp. SolWspMP-sol2th

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 405369
Source DNA and Organism available from Cameron Currie (currie@bact.wisc.edu)
Source DNA available from Cameron Currie (currie@bact.wisc.edu)
Organism available from Cameron Currie (currie@bact.wisc.edu)
Contacts: Cameron Currie (currie@bact.wisc.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Streptomyces sp. SolWspMP-sol2th
collection_date::Missing
lat_lon::Missing
depth::Missing
alt_elev::Missing
country::Missing
num_replicons::Missing
ref_biomaterial::Missing
biotic_relationship::Missing
rel_to_oxygen::Missing
isol_growth_condt::Missing
assembly::Velvet v. 1.1.04; ALLPATHS v. r41043
finishing_strategy::Missing
environment::Missing
trophic_level::Missing
sequencing_meth::WGS
Funding Program::DOE-GLBRC 2011
##MIGS-Data-END##

Global statistics

Total sequence length7,654,598
Total ungapped length7,653,868
Gaps between scaffolds0
Number of scaffolds28
Scaffold N50530,441
Scaffold L506
Number of contigs30
Contig N50530,441
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)30

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,654,598287,653,868530,44120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. SolWspMP-sol2thStreptomyces sp. SolWspMP-sol2th

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004794175.1Streptomyces rhizosphaericolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.7089.8795.36

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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