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mono_v1

Organism name:
Monoraphidium neglectum (green algae)
Infraspecific name:
Strain: SAG 48.87
BioSample:
SAMN02981574
BioProject:
PRJNA221625
Submitter:
Bielefeld University
Date:
2015/02/26
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000611645.1 (latest)
RefSeq assembly accession:
GCF_000611645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AYTC01
Assembly method:
Newbler v. 2.8
Genome coverage:
49.3x
Sequencing technology:
Illumina GAIIx

IDs: 301711 [UID] 1645228 [GenBank] 2311808 [RefSeq]

See Genome Information for Monoraphidium neglectum

History (Show revision history)

Comment

Global statistics

Total sequence length69,711,829
Total ungapped length67,323,290
Gaps between scaffolds0
Number of scaffolds6,720
Scaffold N5015,659
Scaffold L501,302
Number of contigs12,077
Contig N509,150
Contig L502,140
Total number of chromosomes and plasmids2
Number of component sequences (WGS or clone)12,077

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced69,482,6276,71867,095,26715,6045,3560
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All229,2022228,023135,36220
Mitochondrion MT93,840192,66193,84020
Chloroplast CP135,3621135,362135,36200