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genome

Organism name:
Actinotalea ferrariae CF5-4 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CF5-4
BioSample:
SAMN02690685
BioProject:
PRJNA215136
Submitter:
Huazhong Agricultural University
Date:
2014/03/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000603945.1 (latest)
RefSeq assembly accession:
GCF_000603945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AXCW01
Assembly method:
SOAPdenovo v. 1.05
Expected final version:
yes
Genome coverage:
172.2x
Sequencing technology:
Illumina HiSeq

IDs: 134441 [UID] 979028 [GenBank] 1428638 [RefSeq]

See Genome Information for Actinotalea ferrariae

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from the following culture collections KCTC 29134, CCTCC AB2012198

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/04/2014 09:14:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.4 (rev. 428102)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::3,653
CDS::3,558
Pseudo Genes::42
rRNAs::7 ( 5S, 16S, 23S )
tRNAs::45
ncRNA::1
Frameshifted Genes::24
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,987,077
Total ungapped length3,987,077
Number of contigs626
Contig N5015,849
Contig L5072
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)626

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,987,0776263,987,07715,84900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinotalea ferrariae CF5-4Actinotalea ferrariae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000767175.1Cellulomonas carbonistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.3126.2726.34

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna