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ASM51505v1

  • Record removed. This version of the assembly has been suppressed.
Organism name:
Streptomyces sp. CNR698 (high G+C Gram-positive bacteria)
Infraspecific name:
Strain: CNR698
BioSample:
SAMN02597259
BioProject:
PRJNA169773
Submitter:
DOE Joint Genome Institute
Date:
2014/01/07
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000515055.1 (suppressed)
RefSeq assembly accession:
GCF_000515055.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZXC01
Assembly method:
Velvet v. 1.1.04; ALLPATHS v. R37654
Genome coverage:
Unknown
Sequencing technology:
Unknown

IDs: 90181 [UID] 887998 [GenBank] 1120328 [RefSeq]

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 407384
Source DNA and Organism available from Paul Jensen (pjensen@ucsd.edu)
Source DNA available from Paul Jensen (pjensen@ucsd.edu)
Organism available from Paul Jensen (pjensen@ucsd.edu)
Contacts: Paul Jensen (pjensen@ucsd.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
assembly::Velvet v. 1.1.04; ALLPATHS v. R37654
investigation_type::bacteria_archaea
project_name::Streptomyces sp. CNR698
sequencing_meth::WGS
GOLD Stamp ID::Gi14615
Funding Program::DOE-CSP-ICBG 2011
Gram Staining::Gram+
##MIGS-Data-END##

Global statistics

Total sequence length7,496,553
Total ungapped length7,495,213
Gaps between scaffolds0
Number of scaffolds72
Scaffold N50273,671
Scaffold L5010
Number of contigs76
Contig N50273,671
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)76

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,496,553727,495,213273,67140
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