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Pman_1.0

Organism name:
Peromyscus maniculatus bairdii (prairie deer mouse)
BioSample:
SAMN00848614
BioProject:
PRJNA53563
Submitter:
Baylor College of Medicine
Date:
2013/12/03
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000500345.1 (latest)
RefSeq assembly accession:
GCF_000500345.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AYHN01
Assembly method:
Newbler v. 2.3 and 2.5; AllPaths v. 41070; ATLAS-gapfill v. 2.2; ATLAS-link v. 1.0
Genome coverage:
110.0x
Sequencing technology:
FLX 454; Illumina HiSeq

IDs: 84591 [UID] 869028 [GenBank] 950328 [RefSeq]

See Genome Information for Peromyscus maniculatus

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,630,541,020
Total ungapped length2,473,536,444
Gaps between scaffolds0
Number of scaffolds30,921
Scaffold N503,760,915
Scaffold L50193
Number of contigs212,962
Contig N5036,367
Contig L5018,341
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)212,962

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,630,541,02030,9212,473,536,4443,760,915182,0410
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