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PopEup_1.0

Organism name:
Populus euphratica (Euphrates poplar)
BioSample:
SAMN02981499
BioProject:
PRJNA178692
Submitter:
Lanzhou University
Date:
2014/08/12
Release type:
minor
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000495115.1 (latest)
RefSeq assembly accession:
GCF_000495115.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 113 unplaced scaffolds
  • Only in RefSeq: chromosome Pltd
  • Data displayed for RefSeq version
WGS Project:
AOFL01
Assembly method:
BAC by BAC v. Oct-2011
Genome coverage:
115x (4.4x fosmid+111x WGS)
Sequencing technology:
Illumina Hiseq2000

IDs: 16266931 [UID] 862478 [GenBank] 41714458 [RefSeq]

See Genome Information for Populus euphratica

History (Show revision history)

Comment

Global statistics

Total sequence length495,077,684
Total ungapped length471,796,885
Gaps between scaffolds0
Number of scaffolds9,502
Scaffold N50482,846
Scaffold L50203
Number of contigs32,266
Contig N5040,604
Contig L503,060
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)32,266

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced494,920,9189,501471,640,119485,27822,7640
MoleculeTotal
Length
Chloroplast Pltd156,766