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gx033

Organism name:
Glaesserella parasuis gx033 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Serotype: 4
Infraspecific name:
Strain: gx033
BioSample:
SAMN02469856
BioProject:
PRJNA82233
Submitter:
Guangxi Veterinary Research Institute
Date:
2013/04/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000478405.1 (latest)
RefSeq assembly accession:
GCF_000478405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AOSU01
Assembly method:
SOAPdenovo v. 1.05
Genome coverage:
34.39x
Sequencing technology:
Illumia Hiseq2000

IDs: 69421 [UID] 820868 [GenBank] 820888 [RefSeq]

See Genome Information for Glaesserella parasuis

There are 805 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.
Source DNA and bacteria ... available from Department of Bacteriology, Guangxi Veterinary Research Institute, 51 Youaibei Road, Nanning, Guangxi 530001, P.R. China  more

Global statistics

Total sequence length2,127,786
Total ungapped length2,127,786
Number of contigs121
Contig N5038,123
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)121

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,127,7861212,127,78638,12300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Glaesserella parasuis gx033Glaesserella parasuis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900450925.1Glaesserella parasuistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900450925.1Glaesserella parasuistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.6687.6775.87
Best-match type96.6687.6775.87

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna