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AMTR1.0

Organism name:
Amborella trichopoda (flowering plants)
BioSample:
SAMN02313977
BioProject:
PRJNA212863
Submitter:
Amborella Genome Sequencing Project
Date:
2013/09/30
Release type:
minor
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000471905.1 (latest)
RefSeq assembly accession:
GCF_000471905.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AWHE01
Assembly method:
Newbler v. 2.6 build version 20110517_1502
Genome coverage:
30x
Sequencing technology:
454

IDs: 300061 [UID] 855298 [GenBank] 1641288 [RefSeq]

See Genome Information for Amborella trichopoda

History (Show revision history)

Comment

Global statistics

Total sequence length706,495,326
Total ungapped length668,381,576
Gaps between scaffolds0
Number of scaffolds5,746
Scaffold N504,927,027
Scaffold L5050
Number of contigs45,302
Contig N5029,344
Contig L506,468
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)45,302

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced706,332,6405,745668,218,8904,927,02739,5560
MoleculeTotal
Length
Chloroplast Pltd162,686
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