U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

UMD_CASPUR_WB_2.0

Description:
Water Buffalo assembly 2.0 UMD+CASPUR
Organism name:
Bubalus bubalis (water buffalo)
Infraspecific name:
Breed: Mediterranean
Sex:
female
BioSample:
SAMN02191888
BioProject:
PRJNA207334
Submitter:
University of Maryland
Date:
2013/09/30
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000471725.1 (latest)
RefSeq assembly accession:
GCF_000471725.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for GenBank version
WGS Project:
AWWX01
Assembly method:
MaSuRCA v. 1.8.3
Genome coverage:
70.0x
Sequencing technology:
Illumina GAIIx; Illumina HiSeq; 454

IDs: 67671 [UID] 816658 [GenBank] 824618 [RefSeq]

See Genome Information for Bubalus bubalis

There are 8 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,836,150,610
Total ungapped length2,761,762,569
Gaps between scaffolds0
Number of scaffolds366,982
Scaffold N501,412,388
Scaffold L50581
Number of contigs630,367
Contig N5021,938
Contig L5035,881
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)630,367

Supplemental Content

Recent activity

Your browsing activity is temporarily unavailable.

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,836,150,610366,9822,761,762,5691,412,388263,3850
Support Center