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ASM43070v1

Organism name:
Arthrobacter castelli DSM 16402 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:16402
Infraspecific name:
Strain: DSM 16402
BioSample:
SAMN02441477
BioProject:
PRJNA188828
Submitter:
DOE Joint Genome Institute
Date:
2013/07/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000430705.1 (latest)
RefSeq assembly accession:
GCF_000430705.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AUMN01
Assembly method:
Unknown program v. before 2013-04-17
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 62451 [UID] 778958 [GenBank] 1111748 [RefSeq]

See Genome Information for Arthrobacter castelli

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1013837
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The ... JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
country::Austria
environment::Biofilm
investigation_type::bacteria_archaea
isol_growth_condt::16014466
lat_lon::47.215057 15.81161
project_name::Arthrobacter castelli DSM 16402
sequencing_meth::WGS
ref_biomaterial::DSM 16402, LMG 22283
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gi11164
Type Strain::Yes
Funding Program::DOE-CSP 2012
Isolation Site::Rosy biofilm overgrowing a mural painting in the Saint-Catherine chapel
Cell Shape::Rod-shaped
Motility::Nonmotile
Sporulation::Nonsporulating
Temperature Range::Mesophile
Temperature Optimum::22-37 C
Gram Staining::Gram+
Phenotypes::Catalase positive
##MIGS-Data-END##

Global statistics

Total sequence length4,585,800
Total ungapped length4,582,596
Gaps between scaffolds0
Number of scaffolds49
Scaffold N50197,423
Scaffold L509
Number of contigs53
Contig N50177,996
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)52

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,585,800494,582,596197,42340

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Arthrobacter castelli DSM 16402Arthrobacter castelli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025244925.1Arthrobacter zhaoxiniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.352.042.69

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected