U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM41226v2

Organism name:
Streptomyces sp. Mg1 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Mg1
BioSample:
SAMN02471086
BioProject:
PRJNA207881
Submitter:
Texas A&M University
Date:
2015/06/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000412265.2 (latest)
RefSeq assembly accession:
GCF_000412265.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. 8.2
Genome coverage:
30X PacBio; 80X Illumina
Sequencing technology:
PacBio + Illumina MiSeq/HiSeq

IDs: 351511 [UID] 1820798 [GenBank] 1832818 [RefSeq]

See Genome Information for Streptomyces sp. Mg1

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Paul Straight (paul_straight@tamu.edu)
Annotation modified by the submitter

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/05/2023 20:48:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,821
CDSs (total)::7,725
Genes (coding)::7,440
CDSs (with protein)::7,440
Genes (RNA)::96
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::72
ncRNAs::3
Pseudo Genes (total)::286
CDSs (without protein)::285
Pseudo Genes (ambiguous residues)::0 of 286
Pseudo Genes (frameshifted)::119 of 286
Pseudo Genes (incomplete)::214 of 286
Pseudo Genes (internal stop)::20 of 286
Pseudo Genes (multiple problems)::60 of 286
CRISPR Arrays::11
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,716,193
Total ungapped length8,716,193
Total number of chromosomes and plasmids4

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000412275.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP011664.1=NZ_CP011664.1
Plasmid pSMg1-1CP011665.1=NZ_CP011665.1
Plasmid pSMg1-2CP011666.1=NZ_CP011666.1
Plasmid pSMg1-3CP011667.1=NZ_CP011667.1

Assembly statistics

MoleculeTotal
Length
All8,716,193
Chromosome 17,868,178
Plasmid pSMg1-1529,571
Plasmid pSMg1-2134,791
Plasmid pSMg1-3183,653

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. Mg1Streptomyces sp. Mg1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650555.1Streptomyces goshikiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.6785.2688.66

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna