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ASM41226v2

Organism name:
Streptomyces sp. Mg1 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Mg1
BioSample:
SAMN02471086
BioProject:
PRJNA207881
Submitter:
Texas A&M University
Date:
2015/06/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000412265.2 (latest)
RefSeq assembly accession:
GCF_000412265.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. 8.2
Genome coverage:
30X PacBio; 80X Illumina
Sequencing technology:
PacBio + Illumina MiSeq/HiSeq

IDs: 351511 [UID] 1820798 [GenBank] 1832818 [RefSeq]

See Genome Information for Streptomyces sp. Mg1

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Paul Straight (paul_straight@tamu.edu)
Annotation modified by the submitter

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::09/13/2022 01:05:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,846
CDSs (total)::7,750
Genes (coding)::7,428
CDSs (with protein)::7,428
Genes (RNA)::96
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::72
ncRNAs::3
Pseudo Genes (total)::323
CDSs (without protein)::322
Pseudo Genes (ambiguous residues)::0 of 323
Pseudo Genes (frameshifted)::122 of 323
Pseudo Genes (incomplete)::253 of 323
Pseudo Genes (internal stop)::20 of 323
Pseudo Genes (multiple problems)::64 of 323
CRISPR Arrays::11
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,716,193
Total ungapped length8,716,193
Total number of chromosomes and plasmids4

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000412275.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP011664.1=NZ_CP011664.1
Plasmid pSMg1-1CP011665.1=NZ_CP011665.1
Plasmid pSMg1-2CP011666.1=NZ_CP011666.1
Plasmid pSMg1-3CP011667.1=NZ_CP011667.1

Assembly statistics

MoleculeTotal
Length
All8,716,193
Chromosome 17,868,178
Plasmid pSMg1-1529,571
Plasmid pSMg1-2134,791
Plasmid pSMg1-3183,653

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. Mg1Streptomyces sp. Mg1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650555.1Streptomyces goshikiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.6785.2688.66

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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