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PSSSMv1.0

Organism name:
Pseudomonas syringae pv. syringae SM (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SM
BioSample:
SAMN02472030
BioProject:
PRJNA181198
Submitter:
Institute of Plant Biology, University of Zurich
Date:
2013/06/21
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000412165.1 (latest)
RefSeq assembly accession:
GCF_000412165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
APWT01
Assembly method:
Newbler v. 2.5.3
Expected final version:
yes
Genome coverage:
35.1x
Sequencing technology:
454; ABI3730

IDs: 715188 [UID] 715188 [GenBank] 857608 [RefSeq]

See Genome Information for Pseudomonas syringae

There are 669 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from Robert Dudler, Institute of Plant Biology, University of Zurich, Zollikerstrasse 107, 8008, Zurich, Switzerland

Global statistics

Total sequence length6,124,102
Total ungapped length6,094,398
Gaps between scaffolds0
Number of scaffolds2
Scaffold N506,077,542
Scaffold L501
Number of contigs26
Contig N50671,136
Contig L503
Total number of chromosomes and plasmids2
Number of component sequences (WGS or clone)26

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000412175.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CM001986.1=NZ_CM001986.1
Plasmid pSM1CM001987.1=NZ_CM001987.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All6,124,10226,094,3986,077,542240
Chromosome 6,077,54216,047,8386,077,542240
Plasmid pSM146,560146,56046,56000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas syringae pv. syringae SMPseudomonas syringae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000597765.1Pseudomonas syringae DSM 10604suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000597765.1Pseudomonas syringaesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1187.7388.05
Best-match type98.1187.7388.05

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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