U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

SAlb2

Organism name:
Streptomyces albulus CCRC 11814 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CCRC 11814
BioSample:
SAMN02471960
BioProject:
PRJNA196135
Submitter:
University of the Witwatersrand
Date:
2013/08/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000403765.2 (latest)
RefSeq assembly accession:
GCF_000403765.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AROY02
Assembly method:
CLC NGS Cell v. 6
Genome coverage:
174.0x
Sequencing technology:
Illumina MiSeq

IDs: 47211 [UID] 750288 [GenBank] 800628 [RefSeq]

See Genome Information for Streptomyces albulus

There are 10 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/31/2013 10:36:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.1 (rev. 407822)
Features Annotated::Gene; CDS; rRNA; tRNA; repeat_region
Genes::8,253
CDS::8,181
Pseudo Genes::1
rRNAs::3 ( 5S, 16S, 23S )
tRNAs::68
Frameshifted Genes::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,304,371
Total ungapped length9,304,371
Number of contigs242
Contig N5075,627
Contig L5038
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)242

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,304,3712429,304,37175,62700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces albulus CCRC 11814Streptomyces albulus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014650635.1Streptomyces albulussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650635.1Streptomyces albulussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type90.0662.8256.93
Best-match type90.0662.8256.93

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna
Support Center