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Streptomyces lividans 1326

Organism name:
Streptomyces lividans 1326 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 1326
BioSample:
SAMN02469606
BioProject:
PRJNA168962
Submitter:
CINVESTAV
Date:
2013/06/04
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000403665.1 (latest)
RefSeq assembly accession:
GCF_000403665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
APVM01
Assembly method:
Celera Assembler v. 7.0; IMAGE v. 2; SSPACE v. 1
Expected final version:
yes
Genome coverage:
170.0x
Sequencing technology:
Illumina; 454; PacBio

IDs: 697878 [UID] 697878 [GenBank] 857628 [RefSeq]

See Genome Information for Streptomyces lividans

There are 6 assemblies for this organism

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History (Show revision history)

Comment

Source DNA and bacteria available from the John Innes Center, Norwich Research Park, Norwich, NR4 7UH, UK

Global statistics

Total sequence length8,496,762
Total ungapped length8,409,936
Gaps between scaffolds0
Number of scaffolds1
Scaffold N508,496,762
Scaffold L501
Number of contigs85
Contig N50213,650
Contig L5011
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)85

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000403675.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CM001889.1=NZ_CM001889.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 8,496,76218,409,9368,496,762840

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces lividans 1326Streptomyces lividans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014651155.1Streptomyces anthocyanicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.4292.9795.53

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly
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