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ASM38417v1

Organism name:
Streptomyces purpureus KA281 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: KA281
BioSample:
SAMN02261248
BioProject:
PRJNA157921
Submitter:
JGI
Date:
2013/04/26
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from synonym type material
GenBank assembly accession:
GCA_000384175.1 (latest)
RefSeq assembly accession:
GCF_000384175.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ARAD01
Assembly method:
Velvet v. 1.1.05; ALLPATHS v. r30750; Phrap v. 4.24
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 665158 [UID] 610478 [GenBank] 665158 [RefSeq]

See Genome Information for Streptomyces purpureus

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 404834
Source DNA and Organism available from Sean Poust (poust@berkeley.edu)
Source DNA available from Sean Poust (poust@berkeley.edu)
Organism available from Sean Poust (poust@berkeley.edu)
Contacts: Sean Poust (poust@berkeley.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Streptomyces purpureus KA281, ATCC 21405
collection_date::Missing
lat_lon::Missing
depth::Missing
alt_elev::Missing
country::Missing
num_replicons::Missing
ref_biomaterial::ATCC 39115, DSM 43360, CCRC 12066, BCRC 12066, MTCC 3024, NBRC 13925, NCIMB 11313
biotic_relationship::Free living
rel_to_oxygen::Aerobe
isol_growth_condt::Missing
assembly::Velvet v. 1.1.05; ALLPATHS v. r30750; Phrap v. 4.24
finishing_strategy::Missing
environment::Soil
trophic_level::Missing
sequencing_meth::WGS
GOLD Stamp ID::Gi38813
Current Finishing Status::Level 6: Finished
Type Strain::Yes
Funding Program::DOE-JBEI 2010
Isolation Site::Soil with decomposing organic matter, Idaho
Cell Shape::Filament-shaped
Motility::Nonmotile
Sporulation::Sporulating
Temperature Range::Mesophile
Gram Staining::Gram+
##MIGS-Data-END##

Global statistics

Total sequence length7,458,334
Total ungapped length7,456,034
Gaps between scaffolds0
Number of scaffolds1
Scaffold N507,458,334
Scaffold L501
Number of contigs24
Contig N50573,188
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)24

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,458,33417,456,0347,458,334230

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces purpureus KA281Streptomyces purpureus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014648195.1Streptomyces purpureustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014648195.1Streptomyces purpureustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5495.6394.62
Best-match type99.5495.6394.62

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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