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ASM38361v1

Organism name:
Streptomyces canus 299MFChir4.1 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 299MFChir4.1
BioSample:
SAMN02440519
BioProject:
PRJNA187948
Submitter:
DOE Joint Genome Institute
Date:
2013/04/26
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000383615.1 (latest)
RefSeq assembly accession:
GCF_000383615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ARTQ01
Assembly method:
Velvet v. 1.1.04; ALLPATHS v. r42328
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 667258 [UID] 610908 [GenBank] 667258 [RefSeq]

See Genome Information for Streptomyces canus

There are 7 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1003073
Source DNA and Organism available from Jeff Dangl (dangl@email.unc.edu)
Source DNA available from Jeff Dangl (dangl@email.unc.edu)
Organism available from Jeff Dangl (dangl@email.unc.edu)
Contacts: Jeff Dangl (dangl@email.unc.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Streptomyces canus 299MFChir4.1
collection_date::Missing
lat_lon::Missing
depth::Missing
alt_elev::Missing
country::Missing
num_replicons::Missing
ref_biomaterial::Missing
biotic_relationship::Missing
rel_to_oxygen::Missing
isol_growth_condt::Missing
assembly::Velvet v. 1.1.04; ALLPATHS v. r42328
finishing_strategy::Missing
environment::Missing
trophic_level::Missing
sequencing_meth::WGS
GOLD Stamp ID::Gi23910
Gram Staining::Gram+
##MIGS-Data-END##

Global statistics

Total sequence length10,479,972
Total ungapped length10,473,188
Gaps between scaffolds0
Number of scaffolds116
Scaffold N50235,831
Scaffold L5011
Number of contigs148
Contig N50167,116
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)142

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,479,97211610,473,188235,831320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces canus 299MFChir4.1Streptomyces canus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001514145.1Streptomyces canussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001513955.1Streptomyces pseudovenezuelaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type91.7466.6460.46
Best-match type93.6969.6975.92

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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