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ASM37364v1

Organism name:
Streptomyces sp. ATexAB-D23 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ATexAB-D23
BioSample:
SAMN02441037
BioProject:
PRJNA169754
Submitter:
DOE Joint Genome Institute
Date:
2013/04/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000373645.1 (latest)
RefSeq assembly accession:
GCF_000373645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AREH01
Assembly method:
Velvet v. 1.1.04; ALLPATHS v. r41043
Genome coverage:
Unknown
Sequencing technology:
Unknown

IDs: 636098 [UID] 603588 [GenBank] 636098 [RefSeq]

See Genome Information for Streptomyces sp. ATexAB-D23

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 405368
Source DNA and Organism available from Cameron Currie (currie@bact.wisc.edu)
Source DNA available from Cameron Currie (currie@bact.wisc.edu)
Organism available from Cameron Currie (currie@bact.wisc.edu)
Contacts: Cameron Currie (currie@bact.wisc.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Streptomyces sp. ATexAB-D23
collection_date::Missing
lat_lon::Missing
depth::Missing
alt_elev::Missing
country::Missing
num_replicons::Missing
ref_biomaterial::Missing
biotic_relationship::Missing
rel_to_oxygen::Missing
isol_growth_condt::Missing
assembly::Velvet v. 1.1.04; ALLPATHS v. r41043
finishing_strategy::Missing
environment::Biofilm
trophic_level::Missing
sequencing_meth::WGS
Funding Program::DOE-GLBRC 2011
Isolation Site::TA reactor biofilm
##MIGS-Data-END##

Global statistics

Total sequence length7,948,485
Total ungapped length7,947,807
Gaps between scaffolds0
Number of scaffolds89
Scaffold N50262,834
Scaffold L5010
Number of contigs92
Contig N50258,536
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)92

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,948,485897,947,807262,83430

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. ATexAB-D23Streptomyces sp. ATexAB-D23

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001313325.1Streptomyces drozdowicziisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.7224.3461.68

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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