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ASM36480v1

Organism name:
Streptomyces sp. PAMC 26508 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PAMC 26508
BioSample:
SAMN01821993
BioProject:
PRJNA182709
Submitter:
Korea Polar Research Institute
Date:
2013/04/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000364805.1 (latest)
RefSeq assembly accession:
GCF_000364805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 589778 [UID] 588548 [GenBank] 589778 [RefSeq]

See Genome Information for Streptomyces sp. PAMC 26508

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/20/2022 03:48:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,733
CDSs (total)::6,644
Genes (coding)::6,483
CDSs (with protein)::6,483
Genes (RNA)::89
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::162
CDSs (without protein)::161
Pseudo Genes (ambiguous residues)::0 of 162
Pseudo Genes (frameshifted)::75 of 162
Pseudo Genes (incomplete)::117 of 162
Pseudo Genes (internal stop)::12 of 162
Pseudo Genes (multiple problems)::38 of 162
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,630,245
Total ungapped length7,630,245
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000364815.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003990.1=NC_021055.1
Plasmid pSP01CP003991.1=NC_021056.1

Assembly statistics

MoleculeTotal
Length
All7,630,245
Chromosome 7,526,197
Plasmid pSP01104,048

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. PAMC 26508Streptomyces sp. PAMC 26508

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000717245.1[Kitasatospora] papulosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.3493.0293.77

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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