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ASM35952v1

Organism name:
Streptomyces albidoflavus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: J1074
BioSample:
SAMN02603310
BioProject:
PRJNA180996
Submitter:
HIPS/LNU
Date:
2013/04/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000359525.1 (latest)
RefSeq assembly accession:
GCF_000359525.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
MIRA v. 3.4
Sequencing technology:
Sanger dideoxy sequencing; 454; Illumina

IDs: 588308 [UID] 582108 [GenBank] 588308 [RefSeq]

See Genome Information for Streptomyces albidoflavus

There are 57 assemblies for this organism

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History (Show revision history)

Comment

The organism was changed from "Streptomyces albus J1074" to "Streptomyces albidoflavus" in October 2018.
Bacteria available from A. Luzhetskyy (andriy.luzhetskyy@helmholtz-hzi.de)

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/20/2022 07:22:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,974
CDSs (total)::5,883
Genes (coding)::5,788
CDSs (with protein)::5,788
Genes (RNA)::91
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::67
ncRNAs::3
Pseudo Genes (total)::95
CDSs (without protein)::95
Pseudo Genes (ambiguous residues)::0 of 95
Pseudo Genes (frameshifted)::31 of 95
Pseudo Genes (incomplete)::69 of 95
Pseudo Genes (internal stop)::7 of 95
Pseudo Genes (multiple problems)::11 of 95
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_000359525.1
Current Name::Streptomyces albidoflavus
Previous Name::Streptomyces albus J1074
Date Updated::2018-10-26
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_000719955.1
A1 Name::Streptomyces albidoflavus
A1 ANI::99.10677%
A1 Query Coverage::94.24%
A1 Subject Coverage::91.01%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_000813365.1
A2 Name::Streptomyces albus J1074
A2 ANI::83.39719%
A2 Query Coverage::14.78%
A2 Subject Coverage::13.33%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length6,841,649
Total ungapped length6,841,649
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000359535.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP004370.1=NC_020990.1

Assembly statistics

MoleculeTotal
Length
Chromosome 6,841,649

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces albidoflavusStreptomyces albidoflavus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000719955.1Streptomyces albidoflavustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000719955.1Streptomyces albidoflavustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1194.2491.01
Best-match type99.1194.2491.01

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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