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LepWed1.0

Organism name:
Leptonychotes weddellii (Weddell seal)
Isolate:
WS11-02
Sex:
female
BioSample:
SAMN00672463
Submitter:
Broad Institute
Date:
2013/03/29
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000349705.1 (latest)
RefSeq assembly accession:
GCF_000349705.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
APMU01
Assembly method:
allpaths v. R41856 HAPLOIDIFY=True
Genome coverage:
82x
Sequencing technology:
Illumina HiSeq

IDs: 562188 [UID] 562188 [GenBank] 897618 [RefSeq]

See Genome Information for Leptonychotes weddellii

History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Daniel P. Costa, Department of Ecology & Evolutionary Biology, University of California.

Global statistics

Total sequence length3,156,902,762
Total assembly gap length933,738,633
Gaps between scaffolds0
Number of scaffolds16,711
Scaffold N50904,031
Scaffold L50921
Number of contigs169,547
Contig N5023,664
Contig L5027,102
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,156,886,15916,7102,223,147,526904,068152,8360
MoleculeTotal
Length
Mitochondrion MT16,603
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