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ASM34932v1

Organism name:
Streptomyces davaonensis JCM 4913 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 4913
BioSample:
SAMEA2272568
BioProject:
PRJEB184
Submitter:
CeBiTec
Date:
2012/10/09
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000349325.1 (latest)
RefSeq assembly accession:
GCF_000349325.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 562028 [UID] 561808 [GenBank] 562028 [RefSeq]

See Genome Information for Streptomyces davaonensis

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/14/2021 05:31:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,675
CDSs (total)::8,584
Genes (coding)::8,365
CDSs (with protein)::8,365
Genes (RNA)::91
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::70
ncRNAs::3
Pseudo Genes (total)::219
CDSs (without protein)::219
Pseudo Genes (ambiguous residues)::0 of 219
Pseudo Genes (frameshifted)::78 of 219
Pseudo Genes (incomplete)::170 of 219
Pseudo Genes (internal stop)::18 of 219
Pseudo Genes (multiple problems)::41 of 219
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,555,950
Total ungapped length9,554,503
Gaps between scaffolds0
Number of scaffolds2
Scaffold N509,466,619
Scaffold L501
Number of contigs4
Contig N505,836,073
Contig L501
Total number of chromosomes and plasmids2
Number of component sequences (WGS or clone)2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000349335.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome HE971709.1=NC_020504.1
Plasmid pSDA1HE971710.1=NC_020545.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All9,555,95029,554,5039,466,61920
Chromosome 9,466,61919,465,1729,466,61920
Plasmid pSDA189,331189,33189,33100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces davaonensis JCM 4913Streptomyces davaonensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000715615.1Streptomyces cinnabarinussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.3074.8376.11

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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