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PlanoHalo1.0

Organism name:
Planococcus halocryophilus Or1 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:24743
Infraspecific name:
Strain: Or1
BioSample:
SAMN02470529
BioProject:
PRJNA171367
Submitter:
McGill University
Date:
2013/02/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000342445.1 (latest)
RefSeq assembly accession:
GCF_000342445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ANBV01
Assembly method:
MIRA v. 3.4
Genome coverage:
27.0x
Sequencing technology:
454; Illumina HiSeq

IDs: 556188 [UID] 552388 [GenBank] 556188 [RefSeq]

See Genome Information for Planococcus halocryophilus

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,426,806
Total ungapped length3,426,806
Number of contigs34
Contig N50217,570
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,426,806343,426,806217,57000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Planococcus halocryophilus Or1Planococcus halocryophilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001687585.2Planococcus halocryophilustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001687585.2Planococcus halocryophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9498.1298.17
Best-match type99.9498.1298.17

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna