U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

ASM34084v1

Organism name:
Streptomyces hygroscopicus subsp. jinggangensis TL01 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: TL01
BioSample:
SAMN02603881
BioProject:
PRJNA169410
Submitter:
State Key Laboratory of Microbial Metabolism, Shanghai Jiaotong University
Date:
2013/02/19
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000340845.1 (latest)
RefSeq assembly accession:
GCF_000340845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 567028 [UID] 540678 [GenBank] 567028 [RefSeq]

See Genome Information for Streptomyces hygroscopicus

There are 13 assemblies for this organism

See more

History (Show revision history)

Comment

The bacterium is available from China General Microbiological Culture Collection Center (CGMCC). Source DNA is available from Linquan Bai (bailq@sjtu.edu.cn).

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/09/2022 06:05:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::9,083
CDSs (total)::8,987
Genes (coding)::8,600
CDSs (with protein)::8,600
Genes (RNA)::96
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::73
ncRNAs::5
Pseudo Genes (total)::387
CDSs (without protein)::387
Pseudo Genes (ambiguous residues)::0 of 387
Pseudo Genes (frameshifted)::169 of 387
Pseudo Genes (incomplete)::311 of 387
Pseudo Genes (internal stop)::34 of 387
Pseudo Genes (multiple problems)::110 of 387
CRISPR Arrays::6
##Genome-Annotation-Data-END##

Global statistics

Total sequence length10,077,952
Total ungapped length10,077,952
Total number of chromosomes and plasmids3

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000340855.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003720.1=NC_020895.1
Plasmid pSHJGH1CP003721.1=NC_020894.1
Plasmid pSHJGH2CP003722.1=NC_020293.1

Assembly statistics

MoleculeTotal
Length
All10,077,952
Chromosome 9,840,102
Plasmid pSHJGH1164,565
Plasmid pSHJGH273,285

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces hygroscopicus subsp. jinggangensis TL01Streptomyces hygroscopicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001553455.1Streptomyces hygroscopicus subsp. hygroscopicustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001514055.1Streptomyces corchorusiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type84.0214.4015.33
Best-match type98.9689.0387.23

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchbest matching type is part of Streptomyces; we treat this group as inconclusive
Support Center