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Mycfi2

Organism name:
Pseudocercospora fijiensis CIRAD86 (ascomycete fungi)
Infraspecific name:
Strain: CIRAD86
BioSample:
SAMN02744058
BioProject:
PRJNA19049
Submitter:
DOE Joint Genome Institute
Date:
2013/02/26
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000340215.1 (latest)
RefSeq assembly accession:
GCF_000340215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AIHZ01
Assembly method:
Arachne v. 20071016_modified
Genome coverage:
7.11x
Sequencing technology:
Sanger

IDs: 555208 [UID] 555208 [GenBank] 1063768 [RefSeq]

See Genome Information for Pseudocercospora fijiensis

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://genome.jgi.doe.gov/Mycfi2
JGI Project ID: 16189
The DNA was provided by Stephen Goodwin(sgoodwin@purdue.edu)
The strain is available from CBS Culture Collection
Contacts: Stephen Goodwin (sgoodwin@purdue.edu)
Gert H. Kema (gert.kema@wur.nl)
Igor Grigoriev (ivgrigoriev@lbl.gov)
Assembly and annotation done by JGI.
The JGI and collaborators endorse the principles for ... the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length74,141,167
Total ungapped length73,730,520
Gaps between scaffolds0
Number of scaffolds56
Scaffold N505,901,819
Scaffold L505
Number of contigs778
Contig N50210,716
Contig L5099
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)778

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced74,141,1675673,730,5205,901,8197220