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ASM33761v1

Organism name:
Natrinema pallidum DSM 3751 (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:3751
Infraspecific name:
Strain: DSM 3751
BioSample:
SAMN02471671
BioProject:
PRJNA174936
Submitter:
University of California, Davis
Date:
2013/02/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000337615.1 (latest)
RefSeq assembly accession:
GCF_000337615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AOII01
Assembly method:
A5 v. Nov-2011
Genome coverage:
200x
Sequencing technology:
Illumina GAIIX; HiSeq

IDs: 536608 [UID] 534198 [GenBank] 536608 [RefSeq]

See Genome Information for Natrinema pallidum

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length3,915,814
Total ungapped length3,915,814
Number of contigs115
Contig N5088,603
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)115

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,915,8141153,915,81488,60300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Natrinema pallidum DSM 3751Natrinema pallidum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000731985.1Natrinema altunensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.5577.0279.91

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected