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Source database (GenBank or RefSeq) File type

Oorc_1.1

Organism name:

Orcinus orca (killer whale)

Isolate:

Morgan

Sex:

male

BioSample:

SAMN01180276

BioProject:

PRJNA167475

Submitter:

Marine mammals

Date:

2013/01/31

Release type:

Minor

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_000331955.2 (latest)

RefSeq assembly accession:

GCF_000331955.2 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

ANOL02

Assembly method:

AllPaths v. 41070; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2

Genome coverage:

200.0x

Sequencing technology:

Illumina HiSeq

IDs: 138341 [UID] 986878 [GenBank] 994138 [RefSeq]

See Genome Information for Orcinus orca

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000331955.2	=	GCF_000331955.2	Oorc_1.1	Scaffold	Latest GenBank, RefSeq suppressed
GCA_000331955.1	≠	GCF_000331955.1	Oorc_1.1	Scaffold	Replaced GenBank, RefSeq suppressed

Comment

Morgan is a female whale (not male, as originally indicated), so the GenBank records were corrected in February 2013.
This work is a collaboration with Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Denmark

Global statistics

Total sequence length	2,372,919,875
Total ungapped length	2,249,582,125
Gaps between scaffolds	0
Number of scaffolds	1,668
Scaffold N50	12,735,091
Scaffold L50	60
Number of contigs	80,100
Contig N50	70,300
Contig L50	9,480
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	80,100

Assembly

Genome Assembly

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Oorc_1.1

See Genome Information for Orcinus orca

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear