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Oorc_1.1

Organism name:
Orcinus orca (killer whale)
Isolate:
Morgan
Sex:
female
BioSample:
SAMN01180276
BioProject:
PRJNA167475
Submitter:
Marine mammals
Date:
2013/01/31
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000331955.2 (latest)
RefSeq assembly accession:
GCF_000331955.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ANOL02
Assembly method:
AllPaths v. 41070; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2
Genome coverage:
200.0x
Sequencing technology:
Illumina HiSeq

IDs: 138341 [UID] 986878 [GenBank] 994138 [RefSeq]

See Genome Information for Orcinus orca

History (Show revision history)

Comment

Morgan is a female whale (not male, as originally indicated), so the GenBank records were corrected in February 2013.

Global statistics

Total sequence length2,372,919,875
Total assembly gap length123,337,750
Gaps between scaffolds0
Number of scaffolds1,668
Scaffold N5012,735,091
Scaffold L5060
Number of contigs80,100
Contig N5070,300
Contig L509,480
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)80,100

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,372,903,4891,6672,249,565,73912,735,09178,4320
MoleculeTotal
Length
Mitochondrion MT16,386
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