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CHIR_1.0

Organism name:
Capra hircus (goat)
Infraspecific name:
Breed: Yunnan black goat
BioSample:
SAMN02953816
Submitter:
International Goat Genome Consortium
Date:
2013/01/11
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000317765.1 (replaced)
RefSeq assembly accession:
GCF_000317765.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT.
  • Data displayed for GenBank version
WGS Project:
AJPT01
Assembly method:
SOAPdenovo v. 1.03
Genome coverage:
86.64x
Sequencing technology:
Illumina GA IIx

IDs: 524258 [UID] 524258 [GenBank] 780218 [RefSeq]

See Genome Information for Capra hircus

There are 2 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length2,635,832,257
Total assembly gap length139,909,055
Gaps between scaffolds411
Number of scaffolds77,431
Scaffold N5014,391,519
Scaffold L5056
Number of contigs337,494
Contig N5018,934
Contig L5038,700
Total number of chromosomes and plasmids30

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000317775.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM001710.1=NC_022293.10
Chromosome 2CM001711.1=NC_022294.10
Chromosome 3CM001712.1=NC_022295.10
Chromosome 4CM001713.1=NC_022296.10
Chromosome 5CM001714.1=NC_022297.10
Chromosome 6CM001715.1=NC_022298.10
Chromosome 7CM001716.1=NC_022299.10
Chromosome 8CM001717.1=NC_022300.10
Chromosome 9CM001718.1=NC_022301.10
Chromosome 10CM001719.1=NC_022302.10
Chromosome 11CM001720.1=NC_022303.10
Chromosome 12CM001721.1=NC_022304.10
Chromosome 13CM001722.1=NC_022305.10
Chromosome 14CM001723.1=NC_022306.10
Chromosome 15CM001724.1=NC_022307.10
Chromosome 16CM001725.1=NC_022308.10
Chromosome 17CM001726.1=NC_022309.10
Chromosome 18CM001727.1=NC_022310.10
Chromosome 19CM001728.1=NC_022311.10
Chromosome 20CM001729.1=NC_022312.10
Chromosome 21CM001730.1=NC_022313.10
Chromosome 22CM001731.1=NC_022314.10
Chromosome 23CM001732.1=NC_022315.10
Chromosome 24CM001733.1=NC_022316.10
Chromosome 25CM001734.1=NC_022317.10
Chromosome 26CM001735.1=NC_022318.10
Chromosome 27CM001736.1=NC_022319.10
Chromosome 28CM001737.1=NC_022320.10
Chromosome 29CM001738.1=NC_022321.10
Chromosome XCM001739.1=NC_022322.10
unplacedn/an/an/a76,990

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1155,011,30730146,750,46915,610,27415,41029
Chromosome 2135,415,75112128,477,13837,201,83513,28611
Chromosome 3116,796,11623110,641,26114,391,51911,50122
Chromosome 4115,961,47812110,086,47718,826,98611,09311
Chromosome 5111,055,20122104,913,85712,248,66811,53121
Chromosome 6114,334,46127107,933,54427,508,38611,60026
Chromosome 7106,547,26318101,181,36112,042,67310,23617
Chromosome 8111,020,52416105,236,62916,804,78510,63315
Chromosome 990,293,9421585,779,71215,236,7658,24814
Chromosome 1099,198,1511194,496,24314,345,6208,77710
Chromosome 11105,305,0702099,690,05716,740,96710,81919
Chromosome 1282,535,1421078,314,93314,493,1108,0029
Chromosome 1380,625,018777,080,56817,989,1096,9476
Chromosome 1492,306,894787,542,94921,375,5878,3796
Chromosome 1578,986,9262274,874,5507,947,4307,47521
Chromosome 1677,678,5081573,840,65815,658,2237,13114
Chromosome 1771,877,6451667,922,6569,081,0247,19815
Chromosome 1861,067,8801657,940,03613,839,6026,53315
Chromosome 1962,130,014659,317,18932,194,6816,1895
Chromosome 2071,279,863867,833,32512,075,1186,5517
Chromosome 2166,773,2501363,268,58112,572,4296,48812
Chromosome 2257,956,300555,276,04534,558,4975,4524
Chromosome 2349,403,1801247,042,71012,556,6304,77711
Chromosome 2461,756,751658,607,92737,337,5115,5695
Chromosome 2541,496,684839,202,96036,617,6514,7207
Chromosome 2650,169,5831147,426,4676,601,2875,10010
Chromosome 2744,118,849442,112,11010,758,9923,7843
Chromosome 2843,231,9481041,173,6627,569,1183,9139
Chromosome 2948,376,3771945,334,0464,668,7085,42818
Chromosome X121,952,64440115,292,3635,526,88812,86839
unplaced111,169,53776,990101,332,71951,99714,4250
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