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Csi_valencia_1.0

Organism name:
Citrus sinensis (sweet orange)
Infraspecific name:
Cultivar: Valencia
BioSample:
SAMN02981414
BioProject:
PRJNA86123
Submitter:
China sweet orange genome project
Date:
2012/12/12
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000317415.1 (latest)
RefSeq assembly accession:
GCF_000317415.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AJPS01
Assembly method:
SOAPdenovo v. April 2011
Genome coverage:
214.0x
Sequencing technology:
Illumina

IDs: 506528 [UID] 506528 [GenBank] 880258 [RefSeq]

See Genome Information for Citrus sinensis

There are 10 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length327,829,540
Total ungapped length301,231,509
Gaps between scaffolds151
Number of scaffolds4,995
Scaffold N501,778,813
Scaffold L5051
Number of contigs17,383
Contig N5049,898
Contig L501,784
Total number of chromosomes and plasmids10
Number of component sequences (WGS or clone)17,383

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000317425.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM001701.1=NC_023046.10
Chromosome 2CM001702.1=NC_023047.10
Chromosome 3CM001703.1=NC_023048.10
Chromosome 4CM001704.1=NC_023049.10
Chromosome 5CM001705.1=NC_023050.10
Chromosome 6CM001706.1=NC_023051.10
Chromosome 7CM001707.1=NC_023052.10
Chromosome 8CM001708.1=NC_023053.10
Chromosome 9CM001709.1=NC_023054.10
unplacedn/an/an/a4,834

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All327,669,4114,994301,071,3801,778,81312,388151
Chromosome 128,801,8521827,200,2402,640,50494217
Chromosome 230,838,3791829,192,7983,170,58990717
Chromosome 328,715,7842326,751,3471,564,81797722
Chromosome 419,951,8381118,742,4043,095,31862210
Chromosome 536,147,5632333,978,0242,113,1211,29022
Chromosome 621,175,8151420,000,1072,219,02866113
Chromosome 732,205,8691829,951,2103,019,3751,08617
Chromosome 822,711,8232120,996,9421,889,71480620
Chromosome 918,450,7851417,092,9581,761,54964913
unplaced88,669,7034,83477,165,350640,7634,4480
MoleculeTotal
Length
Chloroplast Pltd160,129
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