Format

Download Assemblies

Send to:

Choose Destination

ASM31558v1

Organism name:
Fischerella sp. PCC 9339 (cyanobacteria)
Infraspecific name:
Strain: PCC 9339
BioSample:
SAMN02261257
BioProject:
PRJNA159505
Submitter:
JGI
Date:
2012/11/30
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000315585.1 (latest)
RefSeq assembly accession:
GCF_000315585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ALVS01
Assembly method:
Newbler v. 2.3
Genome coverage:
30x
Sequencing technology:
454-GS-FLX-Titanium; Illumina HiSeq 2000

IDs: 621898 [UID] 501998 [GenBank] 621898 [RefSeq]

See Genome Information for Fischerella sp. PCC 9339

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 404148
Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) 
 Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov)
Whole genome sequencing and draft assembly at JGI-PGF. Annotation by JGI-ORNL. The JGI and collaborators endorse the principles for ... the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length8,008,257
Total ungapped length8,000,057
Gaps between scaffolds0
Number of scaffolds13
Scaffold N505,991,344
Scaffold L501
Number of contigs95
Contig N50244,492
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)95

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,008,257138,000,0575,991,344820
Support Center