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EchTel2.0

Organism name:
Echinops telfairi (small Madagascar hedgehog)
Isolate:
266
Sex:
female
BioSample:
SAMN00216137
BioProject:
PRJNA12590
Submitter:
Broad Institute
Date:
2012/11/28
Synonyms:
echTel2
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000313985.1 (replaced)
RefSeq assembly accession:
GCF_000313985.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AAIY02
Assembly method:
ALLPATHS v. R37599
Genome coverage:
78x
Sequencing technology:
Illumina Hi-Seq

IDs: 500848 [UID] 500848 [GenBank] 688268 [RefSeq]

See Genome Information for Echinops telfairi

History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Heinz Kunzle, Institute of Anatomy, LM University of Munich, Germany.

Global statistics

Total sequence length2,947,024,286
Total ungapped length2,605,196,361
Gaps between scaffolds0
Number of scaffolds8,402
Scaffold N5045,764,842
Scaffold L5021
Number of contigs277,846
Contig N5020,428
Contig L5035,397
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)277,846

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,947,007,7378,4012,605,179,81245,764,842269,4440
MoleculeTotal
Length
Mitochondrion MT16,549
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