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Source database (GenBank or RefSeq) File type

EchTel2.0

This assembly has been replaced. See current version

Organism name:

Echinops telfairi (small Madagascar hedgehog)

Isolate:

266

Sex:

female

BioSample:

SAMN00216137

BioProject:

PRJNA12590

Submitter:

Broad Institute

Date:

2012/11/28

Synonyms:

echTel2

Assembly level:

Scaffold

Genome representation:

full

GenBank assembly accession:

GCA_000313985.1 (replaced)

RefSeq assembly accession:

GCF_000313985.1 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

AAIY02

Assembly method:

ALLPATHS v. R37599

Genome coverage:

78x

Sequencing technology:

Illumina Hi-Seq

IDs: 500848 [UID] 500848 [GenBank] 688268 [RefSeq]

See Genome Information for Echinops telfairi

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000313985.2	≠	GCF_000313985.2	ASM31398v2	Scaffold	Latest GenBank, Latest RefSeq
GCA_000313985.1	≠	GCF_000313985.1	EchTel2.0	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Heinz Kunzle, Institute of Anatomy, LM University of Munich, Germany.

Global statistics

Total sequence length	2,947,024,286
Total ungapped length	2,605,196,361
Gaps between scaffolds	0
Number of scaffolds	8,402
Scaffold N50	45,764,842
Scaffold L50	21
Number of contigs	277,846
Contig N50	20,428
Contig L50	35,397
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	277,846

Assembly

Genome Assembly

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EchTel2.0

See Genome Information for Echinops telfairi

Pathogen Detection Resources

History (Show revision history)

Comment

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear