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ASM29945v1

Organism name:
Escherichia coli O104:H4 str. 2011C-3493 (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: 2011C-3493
BioSample:
SAMN01831188
BioProject:
PRJNA81095
Submitter:
Los Alamos National Laboratory
Date:
2012/09/27
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000299455.1 (latest)
RefSeq assembly accession:
GCF_000299455.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 428948 [UID] 427558 [GenBank] 428948 [RefSeq]

See Genome Information for Escherichia coli

There are 125535 assemblies for this organism

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History (Show revision history)

Comment

DNA and stock bacterial strain for this genome may be available upon request made to the authors. 
Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please ... be aware that the annotation is done automatically with little or no manual curation.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/25/2020 23:25:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,314
CDSs (total)::5,191
Genes (coding)::4,964
CDSs (with protein)::4,964
Genes (RNA)::123
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::92
ncRNAs::9
Pseudo Genes (total)::227
CDSs (without protein)::227
Pseudo Genes (ambiguous residues)::0 of 227
Pseudo Genes (frameshifted)::105 of 227
Pseudo Genes (incomplete)::127 of 227
Pseudo Genes (internal stop)::51 of 227
Pseudo Genes (multiple problems)::48 of 227
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,437,407
Total ungapped length5,437,407
Total number of chromosomes and plasmids4

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000299465.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003289.1=NC_018658.1
Plasmid pAA-EA11CP003291.1=NC_018666.1
Plasmid pESBL-EA11CP003290.1=NC_018659.1
Plasmid pG-EA11CP003292.1=NC_018660.1

Assembly statistics

MoleculeTotal
Length
All5,437,407
Chromosome 5,273,097
Plasmid pAA-EA1174,217
Plasmid pESBL-EA1188,544
Plasmid pG-EA111,549
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