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Oar_v4.0

Organism name:
Ovis aries (sheep)
Infraspecific name:
Breed: Texel
BioSample:
SAMN00116405
BioProject:
PRJNA169880
Submitter:
International Sheep Genome Consortium
Date:
2015/11/20
Synonyms:
oviAri4
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000298735.2 (latest)
RefSeq assembly accession:
GCF_000298735.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AMGL02
Assembly method:
SOAPdenovo v. 1.03; PBJelly2 v. 14.9.9
Genome coverage:
166.0x
Sequencing technology:
Illumina GAII; 454; PacBio RSII

IDs: 585171 [UID] 2691088 [GenBank] 2701238 [RefSeq]

See Genome Information for Ovis aries

There are 4 assemblies for this organism

See more

History (Show revision history)

Global statistics

Total sequence length2,615,516,299
Total assembly gap length28,000,626
Gaps between scaffolds0
Number of scaffolds5,466
Scaffold N50100,009,711
Scaffold L508
Number of contigs48,482
Contig N50150,472
Contig L505,008
Total number of chromosomes and plasmids28
Number of component sequences (WGS or clone)48,482

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000298745.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM001582.2=NC_019458.20
Chromosome 2CM001583.2=NC_019459.20
Chromosome 3CM001584.2=NC_019460.20
Chromosome 4CM001585.2=NC_019461.20
Chromosome 5CM001586.2=NC_019462.20
Chromosome 6CM001587.2=NC_019463.20
Chromosome 7CM001588.2=NC_019464.20
Chromosome 8CM001589.2=NC_019465.20
Chromosome 9CM001590.2=NC_019466.20
Chromosome 10CM001591.2=NC_019467.20
Chromosome 11CM001592.2=NC_019468.20
Chromosome 12CM001593.2=NC_019469.20
Chromosome 13CM001594.2=NC_019470.20
Chromosome 14CM001595.2=NC_019471.20
Chromosome 15CM001596.2=NC_019472.20
Chromosome 16CM001597.2=NC_019473.20
Chromosome 17CM001598.2=NC_019474.20
Chromosome 18CM001599.2=NC_019475.20
Chromosome 19CM001600.2=NC_019476.20
Chromosome 20CM001601.2=NC_019477.20
Chromosome 21CM001602.2=NC_019478.20
Chromosome 22CM001603.2=NC_019479.20
Chromosome 23CM001604.2=NC_019480.20
Chromosome 24CM001605.2=NC_019481.20
Chromosome 25CM001606.2=NC_019482.20
Chromosome 26CM001607.2=NC_019483.20
Chromosome XCM001608.2=NC_019484.20
unplacedn/an/an/a5,438

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,615,499,6835,4652,587,499,057100,009,71143,0160
Chromosome 1275,406,9531272,921,884275,406,9534,1120
Chromosome 2248,966,4611246,788,478248,966,4613,3600
Chromosome 3223,996,0681221,812,035223,996,0683,5030
Chromosome 4119,216,6391118,162,388119,216,6391,6890
Chromosome 5107,836,1441107,027,409107,836,1441,4030
Chromosome 6116,888,2561115,798,419116,888,2561,7790
Chromosome 7100,009,711199,248,451100,009,7111,2070
Chromosome 890,615,088189,893,92490,615,0881,1400
Chromosome 994,583,238193,725,10494,583,2381,3250
Chromosome 1086,377,204185,560,95386,377,2041,2510
Chromosome 1162,170,480161,662,62762,170,4808160
Chromosome 1279,028,859178,369,08779,028,8591,0700
Chromosome 1382,951,069182,305,61982,951,0699370
Chromosome 1462,568,341161,903,30462,568,3411,0530
Chromosome 1580,783,214180,025,50980,783,2141,1100
Chromosome 1671,693,149171,121,49071,693,1499310
Chromosome 1772,251,135171,597,96672,251,1351,1510
Chromosome 1868,494,538167,789,20168,494,5381,0990
Chromosome 1960,445,663159,986,39260,445,6638060
Chromosome 2051,049,468150,540,53951,049,4687060
Chromosome 2149,987,992149,384,79149,987,9929110
Chromosome 2250,780,147150,334,28950,780,1477640
Chromosome 2362,282,865161,804,25362,282,8657840
Chromosome 2441,976,827141,567,37041,976,8278680
Chromosome 2545,223,504144,762,96245,223,5046120
Chromosome 2644,047,080143,725,69744,047,0804540
Chromosome X135,185,8011132,940,094135,185,8012,9080
unplaced30,683,7895,43826,738,8229,3755,2670
MoleculeTotal
Length
Mitochondrion MT16,616
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