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OryAfe1.0

Organism name:
Orycteropus afer afer (aardvark)
Isolate:
SDZICR_OR568_19922
Sex:
female
BioSample:
SAMN00744890
Submitter:
Broad Institute
Date:
2012/09/20
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000298275.1 (latest)
RefSeq assembly accession:
GCF_000298275.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
ALYB01
Assembly method:
allpaths v. R40776 LITTLE_HELPS_BIG=False
Genome coverage:
44x
Sequencing technology:
Illumina Hi-Seq

IDs: 426178 [UID] 426178 [GenBank] 1065628 [RefSeq]

See Genome Information for Orycteropus afer

History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Oliver Ryder, Center for Reproduction of Endangered Species, San Diego Zoo.

Global statistics

Total sequence length4,444,080,527
Total assembly gap length1,028,739,906
Gaps between scaffolds0
Number of scaffolds22,509
Scaffold N507,875,832
Scaffold L50158
Number of contigs433,653
Contig N5017,683
Contig L5054,128
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,444,063,71122,5083,415,323,8057,875,832411,1440
MoleculeTotal
Length
Mitochondrion MT16,816
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