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EriEur2.0

Organism name:
Erinaceus europaeus (western European hedgehog)
Isolate:
Erinaceus europaeus_13Jul2011
Sex:
female
BioSample:
SAMN00760989
BioProject:
PRJNA74585
Submitter:
Broad Institute
Date:
2012/09/19
Synonyms:
eriEur2
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000296755.1 (latest)
RefSeq assembly accession:
GCF_000296755.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AMDU01
Assembly method:
allpaths v. R41008
Genome coverage:
79x
Sequencing technology:
Illumina Hi-Seq

IDs: 426148 [UID] 426148 [GenBank] 1008498 [RefSeq]

See Genome Information for Erinaceus europaeus

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Neil J. Gemmell, Center for Reproduction and Genomics, University of Otago, Dunedin, New Zealand.

Global statistics

Total sequence length2,715,720,925
Total assembly gap length382,647,390
Gaps between scaffolds0
Number of scaffolds5,803
Scaffold N503,264,618
Scaffold L50249
Number of contigs225,567
Contig N5021,359
Contig L5031,120
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)225,567

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,715,703,4785,8022,333,056,0883,264,618219,7640
MoleculeTotal
Length
Mitochondrion MT17,447
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