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OchPri3.0

Organism name:
Ochotona princeps (American pika)
Isolate:
Ochotona princeps_07Jul2011
Sex:
female
BioSample:
SAMN00767999
BioProject:
PRJNA74593
Submitter:
Broad Institute
Date:
2012/08/27
Synonyms:
ochPri3
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000292845.1 (latest)
RefSeq assembly accession:
GCF_000292845.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for GenBank version
WGS Project:
ALIT01
Assembly method:
Allpaths v. R41206
Genome coverage:
103x
Sequencing technology:
Illumina Hi-Seq

IDs: 418308 [UID] 418308 [GenBank] 681538 [RefSeq]

See Genome Information for Ochotona princeps

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Kurt Galbreath, Department of Biology, Northern Michigan University.

Global statistics

Total sequence length2,229,824,103
Total ungapped length1,943,976,257
Gaps between scaffolds0
Number of scaffolds10,420
Scaffold N5026,863,993
Scaffold L5026
Number of contigs132,962
Contig N5042,347
Contig L5012,477
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)132,962

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,229,824,10310,4201,943,976,25726,863,993122,5420
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