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CerSimSim1.0

Organism name:
Ceratotherium simum simum (southern white rhinoceros)
Isolate:
SDZICR_KB13650
Sex:
female
BioSample:
SAMN00778988
BioProject:
PRJNA74583
Submitter:
Broad Institute
Date:
2012/07/31
Synonyms:
cerSim1
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000283155.1 (latest)
RefSeq assembly accession:
GCF_000283155.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AKZM01
Assembly method:
ALLPATHS v. R41370
Genome coverage:
91x
Sequencing technology:
Illumina Hi-Seq

IDs: 406328 [UID] 406328 [GenBank] 558658 [RefSeq]

See Genome Information for Ceratotherium simum

History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Oliver Ryder, Center for Reproduction of Endangered Species, San Diego Zoo.

Global statistics

Total sequence length2,464,367,180
Total assembly gap length97,509,168
Gaps between scaffolds0
Number of scaffolds3,087
Scaffold N5026,277,727
Scaffold L5030
Number of contigs57,824
Contig N5092,960
Contig L507,379
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)57,824

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,464,350,3483,0862,366,841,18026,277,72754,7370
MoleculeTotal
Length
Mitochondrion MT16,832
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