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ASM28112v4

Organism name:
Alligator mississippiensis (American alligator)
Isolate:
KSC_2009_1
BioSample:
SAMN02981418
BioProject:
PRJNA159843
Submitter:
International Crocodilian Genomes Working Group
Date:
2016/03/28
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000281125.4 (latest)
RefSeq assembly accession:
GCF_000281125.3 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AKHW03
Assembly method:
Meraculous v. NOVEMBER-2015; HiRise v. NOVEMBER-2015
Expected final version:
yes
Genome coverage:
156.0x
Sequencing technology:
Illumina GAIIx; Illumina HiSeq

IDs: 709851 [UID] 3141928 [GenBank] 3768378 [RefSeq]

See Genome Information for Alligator mississippiensis

There are 3 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length2,161,730,208
Total ungapped length2,114,455,910
Gaps between scaffolds0
Number of scaffolds7,094
Scaffold N5018,600,682
Scaffold L5034
Number of contigs243,735
Contig N5016,665
Contig L5037,733
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)7,094

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,161,713,5627,0932,114,439,26418,600,682236,6410
MoleculeTotal
Length
Mitochondrion MT16,646
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