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JacJac1.0

Organism name:
Jaculus jaculus (lesser Egyptian jerboa)
Isolate:
JJ0015
Sex:
female
BioSample:
SAMN00728442
BioProject:
PRJNA72445
Submitter:
Broad Institute
Date:
2012/07/30
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000280705.1 (latest)
RefSeq assembly accession:
GCF_000280705.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for GenBank version
WGS Project:
AKZC01
Assembly method:
ALLPATHS v. R41689 HAPLOIDIFY=True
Genome coverage:
78x
Sequencing technology:
Illumina Hi-Seq

IDs: 406368 [UID] 406368 [GenBank] 628378 [RefSeq]

See Genome Information for Jaculus jaculus

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. Samples provided by Dr. Kim Cooper, Department of Genetics, Harvard Medical School.

Global statistics

Total sequence length2,835,233,679
Total ungapped length2,470,250,781
Gaps between scaffolds0
Number of scaffolds10,897
Scaffold N5022,080,993
Scaffold L5036
Number of contigs337,361
Contig N5015,675
Contig L5044,339
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)337,361

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,835,233,67910,8972,470,250,78122,080,993326,4640
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