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ASM27764v1

Organism name:
Weissella koreensis KCTC 3621 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: KCTC 3621
BioSample:
SAMN02469598
BioProject:
PRJNA77667
Submitter:
Chunlab Inc
Date:
2012/07/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000277645.1 (latest)
RefSeq assembly accession:
GCF_000277645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AKGG01
Assembly method:
Newbler v. 2.3
Genome coverage:
940.0x
Sequencing technology:
454; Illumina GAIIx

IDs: 484648 [UID] 398098 [GenBank] 484648 [RefSeq]

See Genome Information for Weissella koreensis

Pathogen Detection Resources

There are 9 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,728,940
Total ungapped length1,728,940
Number of contigs17
Contig N50236,957
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)17

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,728,940171,728,940236,95700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Weissella koreensis KCTC 3621Weissella koreensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_011304355.1Weissella coleopterorumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.3336.3338.81

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected