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ChiLan1.0

Organism name:
Chinchilla lanigera (long-tailed chinchilla)
Isolate:
Chin_1
Sex:
female
BioSample:
SAMN00632093
BioProject:
PRJNA68239
Submitter:
Broad Institute
Date:
2012/08/28
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000276665.1 (latest)
RefSeq assembly accession:
GCF_000276665.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AGCD01
Assembly method:
ALLPATHS v. R40776
Genome coverage:
87x
Sequencing technology:
Illumina Hi-Seq

IDs: 397218 [UID] 397218 [GenBank] 753908 [RefSeq]

See Genome Information for Chinchilla lanigera

History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Joseph Kerschner of the Medical College of Wisconsin.

Global statistics

Total sequence length2,390,868,971
Total ungapped length2,284,292,980
Gaps between scaffolds0
Number of scaffolds2,839
Scaffold N5021,893,125
Scaffold L5037
Number of contigs81,656
Contig N5061,105
Contig L5010,854
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)81,656

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,390,852,3912,8382,284,276,40021,893,12578,8170
MoleculeTotal
Length
Mitochondrion MT16,580
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