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Fomme1

Organism name:
Fomitiporia mediterranea MF3/22 (basidiomycete fungi)
Infraspecific name:
Strain: MF3/22
BioSample:
SAMN02981288
BioProject:
PRJNA56107
Submitter:
JGI
Date:
2012/06/29
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000271605.1 (latest)
RefSeq assembly accession:
GCF_000271605.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AEJJ01
Assembly method:
Newbler v. 2.5
Genome coverage:
39x
Sequencing technology:
Sanger; 454; Illumina

IDs: 396288 [UID] 396288 [GenBank] 972668 [RefSeq]

See Genome Information for Fomitiporia mediterranea

History (Show revision history)

Comment

URL -- http://genome.jgi.doe.gov/Fomme1
JGI Project ID: 56107
The DNA was provided by Dimitrios Floudas(dfloudas@clarku.edu)
The strain is available from USDA Forest Products Laboratory
Contacts: David S. Hibbett (dhibbett@clarku.edu)
Igor V. Grigoriev (ivgrigoriev@lbl.gov)
Assembly and annotation done by JGI.
The JGI and collaborators endorse the principles for ... the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length63,354,419
Total ungapped length56,770,801
Gaps between scaffolds0
Number of scaffolds1,412
Scaffold N504,291,492
Scaffold L506
Number of contigs3,952
Contig N5037,766
Contig L50318
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3,952

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced63,354,4191,41256,770,8014,291,4922,5400