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Setaria V1

Organism name:
Setaria italica (foxtail millet)
Infraspecific name:
Strain: Yugu1
BioSample:
SAMN02981383
Submitter:
JGI
Date:
2012/05/17
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000263155.1 (replaced)
RefSeq assembly accession:
GCF_000263155.1 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AGNK01
Assembly method:
Arachne v. 2007101641HA
Genome coverage:
8.29x
Sequencing technology:
Sanger

IDs: 381038 [UID] 381038 [GenBank] 707138 [RefSeq]

See Genome Information for Setaria italica

There are 2 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.phytozome.net
JGI Project ID: 4085729
Seed provided by Jeffrey L. Bennetzen (maize@uga.edu)
Contacts: Jeffrey L. Bennetzen (maize@uga.edu)
Assembly done by JGI.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger ... genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length405,737,341
Total assembly gap length4,826,887
Gaps between scaffolds0
Number of scaffolds336
Scaffold N5047,253,416
Scaffold L504
Number of contigs6,791
Contig N50126,273
Contig L50982
Total number of chromosomes and plasmids0

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Global assembly definition

Download the full sequence report
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced405,737,341336400,910,45447,253,4166,4550
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