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OctDeg1.0

Organism name:
Octodon degus (degu)
Isolate:
3935
Sex:
female
BioSample:
SAMN00769067
BioProject:
PRJNA74595
Submitter:
Broad Institute
Date:
2012/05/01
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000260255.1 (latest)
RefSeq assembly accession:
GCF_000260255.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AJSA01
Assembly method:
allpaths v. R40507 LITTLE_HELPS_BIG=False
Genome coverage:
80x
Sequencing technology:
Illumina Hi-Seq

IDs: 375158 [UID] 375158 [GenBank] 653618 [RefSeq]

See Genome Information for Octodon degus

History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Theresa Lee, Department of Psychology, University of Michigan.

Global statistics

Total sequence length2,995,889,303
Total ungapped length2,526,261,067
Gaps between scaffolds0
Number of scaffolds7,135
Scaffold N5012,091,372
Scaffold L5077
Number of contigs259,905
Contig N5019,847
Contig L5036,018
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)259,905

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,995,872,5057,1342,526,244,26912,091,372252,7700
MoleculeTotal
Length
Mitochondrion MT16,798
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