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Source database (GenBank or RefSeq) File type

panpan1.1

Organism name:

Pan paniscus (pygmy chimpanzee)

Isolate:

Ulindi

Sex:

female

BioSample:

SAMEA1029457

BioProject:

PRJNA49285

Submitter:

Max-Planck Institute for Evolutionary Anthropology

Date:

2015/08/18

Synonyms:

panPan2

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_000258655.2 (latest)

RefSeq assembly accession:

GCF_000258655.2 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.

Data displayed for GenBank version

WGS Project:

AJFE02

Assembly method:

Celera Assembler v. 5.4.3

Genome coverage:

26x

Sequencing technology:

454 GS FLX; 454 GS FLX Titanium

IDs: 474211 [UID] 2242958 [GenBank] 2348668 [RefSeq]

See Genome Information for Pan paniscus

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000258655.2	≠	GCF_000258655.2	panpan1.1	Chromosome	Latest GenBank, RefSeq suppressed
GCA_000258655.1	≠	GCF_000258655.1	panpan1	Scaffold	Replaced GenBank, RefSeq suppressed

Comment

The reads of this assembly are deposited under BioProject PRJEB2481.
The mitochondrial sequence is GenBank Accession Number KT153251

Global statistics

Total sequence length	3,286,643,938
Total ungapped length	2,725,937,204
Gaps between scaffolds	734
Number of scaffolds	10,984
Scaffold N50	8,197,324
Scaffold L50	94
Number of contigs	121,356
Contig N50	66,676
Contig L50	11,048
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	121,337

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM003383.1	=	NC_027868.1	0
Chromosome 2A	CM003384.1	=	NC_027869.1	0
Chromosome 2B	CM003385.1	=	NC_027870.1	0
Chromosome 3	CM003386.1	=	NC_027871.1	0
Chromosome 4	CM003387.1	=	NC_027872.1	0
Chromosome 5	CM003388.1	=	NC_027873.1	0
Chromosome 6	CM003389.1	=	NC_027874.1	0
Chromosome 7	CM003390.1	=	NC_027875.1	0
Chromosome 8	CM003391.1	=	NC_027876.1	0
Chromosome 9	CM003392.1	=	NC_027877.1	0
Chromosome 10	CM003393.1	=	NC_027878.1	0
Chromosome 11	CM003394.1	=	NC_027879.1	0
Chromosome 12	CM003395.1	=	NC_027880.1	0
Chromosome 13	CM003396.1	=	NC_027881.1	0
Chromosome 14	CM003397.1	=	NC_027882.1	0
Chromosome 15	CM003398.1	=	NC_027883.1	0
Chromosome 16	CM003399.1	=	NC_027884.1	0
Chromosome 17	CM003400.1	=	NC_027885.1	0
Chromosome 18	CM003401.1	=	NC_027886.1	0
Chromosome 19	CM003402.1	=	NC_027887.1	0
Chromosome 20	CM003403.1	=	NC_027888.1	0
Chromosome 21	CM003404.1	=	NC_027889.1	0
Chromosome 22	CM003405.1	=	NC_027890.1	0
Chromosome X	CM003406.1	=	NC_027891.1	0
unplaced	n/a	n/a	n/a	10,249

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	3,286,627,333	10,983	2,725,920,599	8,197,324	110,372	734
Chromosome 1	229,774,977	57	211,675,640	5,234,585	9,164	57
Chromosome 2A	114,371,477	30	103,054,030	9,924,239	3,613	30
Chromosome 2B	247,869,975	25	125,329,516	7,312,986	3,462	25
Chromosome 3	205,426,864	29	194,255,761	14,035,829	6,018	29
Chromosome 4	195,804,263	33	184,179,566	17,108,680	5,383	33
Chromosome 5	183,735,486	41	170,663,687	8,467,000	5,086	41
Chromosome 6	173,848,474	38	161,934,637	10,173,652	5,097	38
Chromosome 7	162,613,886	54	145,184,949	7,066,920	6,365	54
Chromosome 8	144,709,823	20	133,239,593	10,463,263	4,251	20
Chromosome 9	138,149,186	30	105,200,006	6,404,179	4,183	30
Chromosome 10	134,942,546	24	122,041,618	9,507,630	4,655	24
Chromosome 11	134,183,262	30	124,248,166	10,583,119	4,843	30
Chromosome 12	135,337,776	36	127,126,022	8,849,717	6,273	36
Chromosome 13	114,479,721	15	89,707,019	6,996,568	2,337	15
Chromosome 14	107,357,366	15	84,576,789	18,017,001	3,321	15
Chromosome 15	99,763,055	29	74,716,965	4,892,001	3,212	29
Chromosome 16	90,481,686	36	69,060,359	6,484,040	4,481	36
Chromosome 17	83,442,489	40	70,394,487	3,192,941	5,594	40
Chromosome 18	77,229,886	9	72,010,380	23,836,001	1,934	9
Chromosome 19	64,411,610	35	50,278,607	2,224,902	6,970	35
Chromosome 20	62,195,757	16	57,301,036	8,816,622	2,682	16
Chromosome 21	46,275,980	4	31,752,698	11,593,801	994	4
Chromosome 22	50,109,623	22	30,584,261	3,671,935	2,528	22
Chromosome X	155,392,059	66	143,933,316	4,911,963	4,934	66
unplaced	134,720,106	10,249	43,471,491	23,326,956	2,992	0

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panpan1.1

See Genome Information for Pan paniscus

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

Comment

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear