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panpan1.1

Organism name:
Pan paniscus (pygmy chimpanzee)
Isolate:
Ulindi
Sex:
female
BioSample:
SAMEA1029457
BioProject:
PRJNA49285
Submitter:
Max-Planck Institute for Evolutionary Anthropology
Date:
2015/08/18
Synonyms:
panPan2
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000258655.2 (latest)
RefSeq assembly accession:
GCF_000258655.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Different: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
AJFE02
Assembly method:
Celera Assembler v. 5.4.3
Genome coverage:
26x
Sequencing technology:
454 GS FLX; 454 GS FLX Titanium

IDs: 474211 [UID] 2242958 [GenBank] 2348668 [RefSeq]

See Genome Information for Pan paniscus

History (Show revision history)

Comment

The reads of this assembly are deposited under BioProject PRJEB2481.
The mitochondrial sequence is GenBank Accession Number KT153251

Global statistics

Total sequence length3,286,643,896
Total assembly gap length560,706,734
Gaps between scaffolds734
Number of scaffolds10,984
Scaffold N508,197,324
Scaffold L5094
Number of contigs121,356
Contig N5066,676
Contig L5011,048
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)121,337

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000258665.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM003383.1=NC_027868.10
Chromosome 2ACM003384.1=NC_027869.10
Chromosome 2BCM003385.1=NC_027870.10
Chromosome 3CM003386.1=NC_027871.10
Chromosome 4CM003387.1=NC_027872.10
Chromosome 5CM003388.1=NC_027873.10
Chromosome 6CM003389.1=NC_027874.10
Chromosome 7CM003390.1=NC_027875.10
Chromosome 8CM003391.1=NC_027876.10
Chromosome 9CM003392.1=NC_027877.10
Chromosome 10CM003393.1=NC_027878.10
Chromosome 11CM003394.1=NC_027879.10
Chromosome 12CM003395.1=NC_027880.10
Chromosome 13CM003396.1=NC_027881.10
Chromosome 14CM003397.1=NC_027882.10
Chromosome 15CM003398.1=NC_027883.10
Chromosome 16CM003399.1=NC_027884.10
Chromosome 17CM003400.1=NC_027885.10
Chromosome 18CM003401.1=NC_027886.10
Chromosome 19CM003402.1=NC_027887.10
Chromosome 20CM003403.1=NC_027888.10
Chromosome 21CM003404.1=NC_027889.10
Chromosome 22CM003405.1=NC_027890.10
Chromosome XCM003406.1=NC_027891.10
unplacedn/an/an/a10,249

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All3,286,627,33310,9832,725,920,5998,197,324110,372734
Chromosome 1229,774,97757211,675,6405,234,5859,16457
Chromosome 2A114,371,47730103,054,0309,924,2393,61330
Chromosome 2B247,869,97525125,329,5167,312,9863,46225
Chromosome 3205,426,86429194,255,76114,035,8296,01829
Chromosome 4195,804,26333184,179,56617,108,6805,38333
Chromosome 5183,735,48641170,663,6878,467,0005,08641
Chromosome 6173,848,47438161,934,63710,173,6525,09738
Chromosome 7162,613,88654145,184,9497,066,9206,36554
Chromosome 8144,709,82320133,239,59310,463,2634,25120
Chromosome 9138,149,18630105,200,0066,404,1794,18330
Chromosome 10134,942,54624122,041,6189,507,6304,65524
Chromosome 11134,183,26230124,248,16610,583,1194,84330
Chromosome 12135,337,77636127,126,0228,849,7176,27336
Chromosome 13114,479,7211589,707,0196,996,5682,33715
Chromosome 14107,357,3661584,576,78918,017,0013,32115
Chromosome 1599,763,0552974,716,9654,892,0013,21229
Chromosome 1690,481,6863669,060,3596,484,0404,48136
Chromosome 1783,442,4894070,394,4873,192,9415,59440
Chromosome 1877,229,886972,010,38023,836,0011,9349
Chromosome 1964,411,6103550,278,6072,224,9026,97035
Chromosome 2062,195,7571657,301,0368,816,6222,68216
Chromosome 2146,275,980431,752,69811,593,8019944
Chromosome 2250,109,6232230,584,2613,671,9352,52822
Chromosome X155,392,05966143,933,3164,911,9634,93466
unplaced134,720,10610,24943,471,49123,326,9562,9920
MoleculeTotal
Length
Mitochondrion MT16,563
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