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ASM25323v1

Organism name:
Streptomyces venezuelae ATCC 10712 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 10712
BioSample:
SAMEA3138410
BioProject:
PRJNA62209
Submitter:
John Innes Centre
Date:
2011/04/13
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000253235.1 (latest)
RefSeq assembly accession:
GCF_000253235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 441368 [UID] 362948 [GenBank] 441368 [RefSeq]

See Genome Information for Streptomyces venezuelae

There are 17 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/14/2022 12:14:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,498
CDSs (total)::7,413
Genes (coding)::7,192
CDSs (with protein)::7,192
Genes (RNA)::85
rRNAs::7, 3, 3 (5S, 16S, 23S)
complete rRNAs::7, 3, 3 (5S, 16S, 23S)
tRNAs::69
ncRNAs::3
Pseudo Genes (total)::222
CDSs (without protein)::221
Pseudo Genes (ambiguous residues)::0 of 222
Pseudo Genes (frameshifted)::62 of 222
Pseudo Genes (incomplete)::177 of 222
Pseudo Genes (internal stop)::10 of 222
Pseudo Genes (multiple problems)::26 of 222
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,226,158
Total ungapped length8,217,299
Gaps between scaffolds0
Number of scaffolds1
Scaffold N508,226,158
Scaffold L501
Number of contigs114
Contig N50112,574
Contig L5021
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000253245.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome FR845719.1=NC_018750.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 8,226,15818,217,2998,226,1581130

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces venezuelae ATCC 10712Streptomyces venezuelae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_021432215.1Streptomyces venezuelae ATCC 10712type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_021432215.1Streptomyces venezuelaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9696.8797.55
Best-match type99.9696.8797.55

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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