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TriManLat1.0

Organism name:
Trichechus manatus latirostris (Florida manatee)
Isolate:
Lorelei
Sex:
female
BioSample:
SAMN00632092
BioProject:
PRJNA68243
Submitter:
Broad Institute
Date:
2012/01/23
Synonyms:
triMan1
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000243295.1 (latest)
RefSeq assembly accession:
GCF_000243295.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AHIN01
Assembly method:
AllPaths v. R38542
Genome coverage:
150x
Sequencing technology:
Illumina HiSeq

IDs: 557048 [UID] 328638 [GenBank] 557048 [RefSeq]

See Genome Information for Trichechus manatus

History (Show revision history)

Comment

Global statistics

Total sequence length3,103,808,406
Total ungapped length2,769,099,677
Gaps between scaffolds0
Number of scaffolds6,323
Scaffold N5014,442,683
Scaffold L5067
Number of contigs166,490
Contig N5037,750
Contig L5021,973
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)166,490

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,103,791,5246,3222,769,082,79514,442,683160,1670
MoleculeTotal
Length
Mitochondrion MT16,882
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