U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

ASM24016v1

Organism name:
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 46488
BioSample:
SAMN02603879
BioProject:
PRJNA78941
Submitter:
State Key Laboratory of Microbial Metabolism, Shanghai Jiaotong University
Date:
2011/12/27
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000240165.1 (latest)
RefSeq assembly accession:
GCF_000240165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 376848 [UID] 322848 [GenBank] 376848 [RefSeq]

See Genome Information for Streptantibioticus cattleyicolor

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/20/2022 15:23:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,235
CDSs (total)::7,147
Genes (coding)::6,961
CDSs (with protein)::6,961
Genes (RNA)::88
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::67
ncRNAs::3
Pseudo Genes (total)::187
CDSs (without protein)::186
Pseudo Genes (ambiguous residues)::0 of 187
Pseudo Genes (frameshifted)::80 of 187
Pseudo Genes (incomplete)::126 of 187
Pseudo Genes (internal stop)::10 of 187
Pseudo Genes (multiple problems)::29 of 187
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,095,515
Total ungapped length8,095,515
Total number of chromosomes and plasmids2

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000240175.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003219.1=NC_017586.1
Plasmid pSCATTCP003229.1=NC_017585.1

Assembly statistics

MoleculeTotal
Length
All8,095,515
Chromosome 6,282,967
Plasmid pSCATT1,812,548

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488Streptantibioticus cattleyicolor

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000237305.1Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000237305.1Streptantibioticus cattleyicolortype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9399.97
Best-match type99.9999.9399.97

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
Support Center